Publications in 2011

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82 publication entries, 37 of them (printed in bold in the list) acknowledge the project support.
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Book chapter
Conference contribution: talk
Conference contribution: poster
PhD Thesis
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Newspaper article
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Paper (reviewed)

Antolik and Bednar 2011	Antolik, J. and Bednar, J.A.	Development of maps of simple and complex cells in the primary visual cortex	Front. Comput. Neurosci. (2011) 5:17 doi:10.3389/fncom.2011.00017	abstract, fulltext
Auffarth et al. 2011	Auffarth, B., Kaplan, B. and Lansner, A.	Map formation in the olfactory bulb by axon guidance of olfactory neurons	Front Syst Neurosci (2011) 5:84 doi:10.3389/fnsys.2011.00084	fulltext
Bazhenov et al. 2011	Bazhenov, M., Lonjers, P., Skorheim, S., Bedard, C. and Destexhe, A.	Non-homogeneous extracellular resistivity affects the current-source density profiles of up/down state oscillations	Phil. Trans. R. Soc. A (2011) 369:3802-3819 doi:10.1098/rsta.2011.0119	abstract, fulltext
Bedard and Destexhe 2011	Bedard, C. and Destexhe, A.	Generalized theory for current-source-density analysis in brain tissue	Phys. Rev. E (2011) 84:041909 doi:10.1103/PhysRevE.84.041909	abstract
Brüderle et al. 2011	Brüderle, D., Petrovici, M. A., Vogginger, B., Ehrlich, M., Pfeil, T., Millner, S., Grübl, A., Wendt, K., Müller, E., Schwartz, M.-O., de Oliveira, D. H., Jeltsch, S., Fieres, J., Schilling, M., Müller, P., Breitwieser, O., Petkov, V., Muller, L., Davison, A. P., Krishnamurthy, P., Kremkow, J., Lundqvist, M., Muller, E., Partzsch, J., Scholze, S., Zühl, L., Mayr, C., Destexhe, A., Diesmann, M., Potjans, T. C., Lansner, A., Schüffny, R., Schemmel, J. and Meier, K.	A comprehensive workflow for general-purpose neural modeling with highly configurable neuromorphic hardware systems	Biological Cybernetics (2011) 104(4-5): 263-296 doi:10.1007/s00422-011-0435-9	abstract, fulltext
Buesing 2011	Buesing, L., Bill, J., Nessler, B. and Maass, W.	Neural Dynamics as Sampling: A Model for Stochastic Computation in Recurrent Networks of Spiking Neurons	PLoS Comput Biol (2011) 7(11): e1002211 doi:10.1371/journal.pcbi.1002211	fulltext
Cessac 2011	Cessac, B.	Statistics of spike trains in conductance-based neural networks: Rigorous results	The Journal of Mathematical Neuroscience (2011) 1:1-42 doi:10.1186/2190-8567-1-8	fulltext, BibTeX
Chossat et al. 2011	Chossat, P., Faye, G., Faugeras, O.	Bifurcations of hyperbolic planforms	Journal of Nonlinear Science (2011) 21(4): 465-498 doi:10.1007/s00332-010-9089-3	abstract, fulltext, BibTeX
Denker et al. 2011c	Denker, M., Roux, S., Lindén, H., Diesmann, M., Riehle, A. and Grün, S.	The local field potential reflects surplus spike synchrony	Cerebral Cortex (2011) 21:2681-2695 doi:10.1093/cercor/bhr040	abstract, fulltext
Fournier et al. 2011	Fournier, J., Monier, C., Pananceau, M. and Fregnac, Y.	Adaptation of the simple or complex nature of V1 receptive fields to visual statistics	Nature Neuroscience (2011) 14: 1053-1060 doi:10.1038/nn.2861	abstract, (fulltext)
Grassia et al. 2011	Grassia, F., Buhry, L., Levi, T., Tomas, J., Destexhe, A. and Saaghi, S.	Tunable neuromimetic integrated system for emulating cortical neuron models	Front. Neurosci. (2011) 5:134 doi:10.3389/fnins.2011.00134
Hanuschkin et al.	Hanuschkin, A., Diesmann M., and Morrison, A.	A reafferent and feed-forward model of song syntax generation in the Bengalese finch	J Comput Neurosci. (2011) 31(3):509-32 doi:10.1007/s10827-011-0318-z	fulltext
Helias et al. 2011	Helias, M., Deger, M., Rotter, S. and Diesmann, M.	Finite post synaptic potentials cause a fast neuronal response	Front. Neurosci. (2011) 5:19 doi:10.3389/fnins.2011.00019	abstract, fulltext
Indiveri et al. 2011	Indiveri, G., Linares-Barranco, B., Hamilton, T. J., van Schaik, A., Etienne-Cummings, R., Delbruck, T., Liu, S.-C., Dudek, P., Häfliger, P., Renaud, S., Schemmel, J., Cauwenberghs, G., Arthur, J., Hynna, K., Folowosele, F., Saïghi, S., Serrano-Gotarredona, T., Wijekoon, J., Wang, Y. and Boahen, K.	Neuromorphic silicon neuron circuits	Front. Neurosci. (2011) 5:73 doi:10.3389/fnins.2011.00073	fulltext
Kunkel et al. 2011	Kunkel, S., Diesmann, M. and Morrison, A.	Limits to the Development of Feed-Forward Structures in Large Recurrent Neuronal Networks	Front. Comput. Neurosci. (2011) 4:160 doi:10.3389/fncom.2010.00160	abstract, fulltext
Kunkel et al. 2011b	Kunkel, S., Potjans, T.C., Eppler, J.M., Plesser, H.E., Morrison, A. and Diesmann, M.	Meeting the memory challenges of brain-scale network simulation	Front. Neuroinform. (2011) 5:35 doi:10.3389/fninf.2011.00035	abstract
LeCam et al 2011	Le Cam, J., Estebanez, L., Jacob, V. and Shulz, D.E.	The spatial structure of multi-whisker receptive fields in the barrel cortex is stimulus-dependent.	J. Neurophysiol (2011) 106(2):986-98 doi:10.1152/jn.00044.2011.
Lindén et al. 2011	Lindén, H., Tetzlaff, T., Potjans, T.C., Pettersen, K.H., Grün, S., Diesmann, M. and Einevoll, G.T.	Modeling the spatial reach of the LFP	Neuron (2011) 72(5): 859-872 doi:10.1016/j.neuron.2011.11.006	fulltext
Lundqvist et al. 2011a	Lundqvist, M., Herman, P. and Lansner, A.	Theta and gamma power increases and alpha/beta power decreases with memory load in an attractor network model	J Cogn Neurosci (2011) 23:3008-3020 doi:10.1162/jocn_a_00029	abstract
Markram et al. 2011	Markram, H., Gerstner, W. and Sjoestoem, P.J.	A history of spike-timing-dependent plasticity	Front. Syn. Neurosci. (2011) 3:4 doi:10.3389/fnsyn.2011.00004	abstract, fulltext
Partzsch 2011	Partzsch, J. and Schüffny, R.	Analysing the Scaling of Connectivity in Neuromorphic Hardware and in Models of Neural Networks	IEEE Transactions on Neural Networks (2011) 22(6):919-935 doi:10.1109/TNN.2011.2134109
Pecevski et al. 2011	Pecevski, D., Buesing, L. and Maass, W.	Probabilistic Inference in General Graphical Models through Sampling in Stochastic Networks of Spiking Neurons	PLoS Comput Biol (2011) 7(12): e1002294 doi:10.1371/journal.pcbi.1002294	fulltext
Perdikis Huys Jirsa 2011	Perdikis, D., Huys, R., Jirsa, V.K.	Time Scale Hierarchies in the Functional Organization of Complex Behaviors	PLoS Comput Biol (2011) 7(9):e1002198 doi:10.1371/journal.pcbi.1002198	fulltext
Peyrache et al. 2011	Peyrache, A., Battaglia, F. and Destexhe, A.	Inhibition recruitment in prefrontal cortex during sleep spindles and gating of hippocampal inputs	PNAS (2011) 108(41): 17207-17212 doi:10.1073/pnas.1103612108	fulltext
Potjans et al. 2011b	Potjans, W., Diesmann, M. and Morrison, A.	An Imperfect Dopaminergic Error Signal Can Drive Temporal-Difference Learning	PLoS Comput Biol. (2011) 7(5): e1001133 doi:10.1371/journal.pcbi.1001133	abstract, fulltext
Rostro-Gonzalez et al. 2011	Rostro-Gonzalez, H., Cessac, B., Girau, B. and Torres-Huitzil, C.	The role of the asymptotic dynamics in the design of FPGA-based hardware implementations of gIF-type neural networks	J. Physiol. Paris, (2011) 105:1-3 doi:10.1016/j.jphysparis.2011.09.004	fulltext, BibTeX
Scholze et al. 2011	Scholze, S., Eisenreich, H., Höppner, S., Ellguth, G., Henker, S., Ander, M., Hänzsche, S., Partzsch, J., Mayr, C. and Schüffny, R.	A 32 GBit/s communication SoC for a waferscale neuromorphic system	Integration, the VLSI Journal (Elsevier) (2011) 45(1): 61-75, doi:10.1016/j.vlsi.2011.05.003
Scholze et al. 2011b	Scholze, S., Schiefer, S., Partzsch, J., Hartmann, S., Mayr, C., Höppner, S., Eisenreich, H., Henker, S., Vogginger, B. and Schüffny, R.	VLSI implementation of a 2.8 Gevent/s packet based AER interface with routing and event sorting functionality	Frontiers in Neuromorphic Engineering (2011) 5:117 doi:10.3389/fnins.2011.00117
Silverstein and Lansner 2011	Silverstein, D.N. and Lansner, A.	Is Attentional Blink a Byproduct of Neocortical Attractors?	Front Comput Neurosci. (2011) 5: 13 doi:10.3389/fncom.2011.00013	abstract, fulltext
Stefanescu and Jirsa 2011	Stefanescu, R. and Jirsa, V.K.	Reduced representations of heterogeneous mixed neural networks with synaptic coupling	Phys. Rev. E (2011) 83: 026204 doi:10.1103/PhysRevE.83.026204
Veltz 2011	Veltz, R.	An analytical method for computing Hopf bifurcation curves in neural field networks with space-dependent delays	Comptes Rendus Mathematique (2011) 349:749-752 doi:10.1016/j.crma.2011.06.014	fulltext, BibTeX
Veltz and Faugeras 2011	Veltz, R. and Faugeras, O.	Stability of the stationary solutions of neural field equations with propagation delays	The Journal of Mathematical Neuroscience (2011) 1:1 doi:10.1186/2190-8567-1-1	abstract, fulltext, BibTeX
Wagatsuma et al. 2011	Wagatsuma, N., Potjans, T.C., Diesmann, M. and Fukai, T.	Layer-dependent attentional processing by top-down signals in a visual cortical microcircuit model	Front. Comput. Neurosci. (2011) 5:31 doi:10.3389/fncom.2011.00031	abstract, fulltext

Book chapter

Bedard and Destexhe in press

Bedard, C. and Destexhe, A.

Modeling local field potentials and their interaction with the extracellular medium

in: Handbook of Neural Activity Measurement, Edited by Brette, R. and Destexhe, A., Cambridge University Press, Cambridge, UK, ISBN:9780521516228

Conference contribution: talk

Davison 2011	Davison, A.	Using PyNN and NineML	Talk at CNS*2011 Workshop: Emerging standards for network modeling
Denker 2011	Denker M	Challenges for workflows in complex electrophysiology projects	Short talk at INCF 2011 Datasharing in Electrophysiology Task Force Meeting, Boston

Conference contribution: poster

Benjaminsson and Lansner 2011	Benjaminsson, S. and Lansner, A.	Extreme Scaling of Brain Simulations	Jülich Blue Gene/P Extreme Scaling Workshop 2011, Technical Report FZJ-JSC-IB-2011-02 available from http://www2.fz-juelich.de/jsc/docs/autoren2011/mohr1/
Bogadhi et al. 2011	Bogadhi, A., Montagnini, A. and Masson, G.S.	Dynamical interaction between retinal and extra-retinal signals in motion integration for smooth pursuit	Journal of Vision (2011) 11(11): article 533 doi:10.1167/11.11.533	abstract
Davison 2011b	Davison, A.	Collaborative and reproducible simulation and data analysis with Sumatra	Front. Neuroinform. Conference Abstract: 4th INCF Congress of Neuroinformatics doi:10.3389/conf.fninf.2011.08.00079	abstract
Davison 2011c	Davison, A.	Automated tracking of scientific computations	AMP 2011: Reproducible Research-Tools and Strategies for Scientific Computing, Vancouver, Canada, July 2011
Dehghani et al. 2011	Dehghani, N., Peyrache, A., Eskandar, E., Madsen, J., Anderson, W., Donoghue, J., Halgren, E., Destexhe, A. and Cash, S.	Relationship between excitatory and inhibitory neuronal activity and local field potentials during human sleep.	Soc Neurosci Abstracts 37: 451.05
Denker et al. 2011a	Denker, M., Davison, A., Grün, S. and Diesmann, M.	How collaborative projects that involve complicated electrophysiological data sets profit from workflow design	Poster at the 4th INCF Congress of Neuroinformatics, Boston, USA doi:10.3389/conf.fninf.2011.08.00080	fulltext
Denker et al. 2011b	Denker, M., Davison, A., Grün, S. and Diesmann, M.	Towards guiding principles in workflow design to facilitate collaborative projects involving massively parallel electrophysiological data	BMC Neuroscience 2011, 12(Suppl 1):P131 doi:10.1186/1471-2202-12-S1-P131	fulltext
Denker et al. 2011d	Denker, M., Wirtssohn, S., Brochier, T., Grün, S. and Riehle, A.	Mapping the synchronization structure of LFP activity in motor cortex	Poster at the Ninth Göttingen Meeting of the German Neuroscience Society 2011: T21-9B	abstract
Denker et al. 2011e	Denker, M., Brochier, T., Grün, S. and Riehle, A.	Spatial synchronization structure of field potentials and spikes in a delayed grip task	Front. Comput. Neurosci. (2011) Conference Abstract: BC11 : Computational Neuroscience & Neurotechnology Bernstein Conference & Neurex Annual Meeting 2011 doi:10.3389/conf.fncom.2011.53.00103	abstract
Djurfeldt 2011	Djurfeldt, M.	The Connection-set Algebra: a formalism for the representation of connectivity structure in neuronal network models, implementations in Python and C++, and their use in simulators	BMC Neuroscience 2011, 12(Suppl 1):P80 doi:10.1186/1471-2202-12-S1-P80	abstract
Eppler et al. 2011	Eppler, J.M., Kunkel, S., Plesser, H.E., Gewaltig, M.-O., Morrison, A. and Diesmann, M.	NEST: An efficient simulator for spiking neural network models	Poster at the Ninth Göttingen Meeting of the German Neuroscience Society 2011: T27-9B	abstract
Eppler et al. 2011b	Eppler, J.M., Enger, H., Heiberg, T., Kriener, B., Plesser, H.E., Diesmann, M. and Djurfeldt, M.	Evaluating the Connection-Set Algebra for the neural simulator NEST	Poster at the 4th INCF Congress of Neuroinformatics, Boston, USA doi:10.3389/conf.fninf.2011.08.00085	abstract
Gorchetchnikov et al. 2011	Gorchetchnikov, A., Cannon, R., Clewley, R., Cornelis, H., Davison, A., De Schutter, E., Djurfeldt, M., Gleeson, P., Hill, S., Hines, M., Kriener, B., Le Franc, Y., Lo, C.-C., Morrison, A., Muller, E., Plesser, H.E., Raikov, I., Ray, S., Schwabe, L. and Szatmary, B.	NineML: declarative, mathematically-explicit descriptions of spiking neuronal networks	Front. Neuroinform. Conference Abstract: 4th INCF Congress of Neuroinformatics doi:10.3389/conf.fninf.2011.08.00098	abstract
Helias et al. 2011b	Helias, M., Tetzlaff, T. and Diesmann, M.	Towards a unified theory of correlations in recurrent neural networks	BMC Neuroscience 2011, 12(Suppl 1):P73 doi:10.1186/1471-2202-12-S1-P73	fulltext
Helias et al. 2011c	Helias, M., Grytskyy, D., Tetzlaff, T. and Diesmann, M.	Model-invariant features of correlations in recurrent networks	Front. Comput. Neurosci. (2011) Conference Abstract: BC11 : Computational Neuroscience & Neurotechnology Bernstein Conference & Neurex Annual Meeting 2011 doi:10.3389/conf.fncom.2011.53.00219	abstract
Lansner 2011	Lansner A	Perceptual and memory functions in a cortexinspired attractor network model	BMC Neuroscience (2011), 12(Suppl 1):K2	abstract
Lindén et al. 2011b	Lindén, H., Tetzlaff, T., Potjans, T.C., Pettersen, K.H., Grün, S., Diesmann, M. and Einevoll, G.T.	How local is the local field potential?	BMC Neuroscience 2011, 12(Suppl 1):O8 doi:10.1186/1471-2202-12-S1-O	fulltext
Martinez-Garcia et al. 2011a	Martinez-Garcia, M., Rolls, E., Deco, G. and Romo, R.	Computational mechanisms of postponed decisions	Poster at the CNS Congress, Stockholm, Sweden, July 2011
Martinez-Garcia et al. 2011b	Martinez-Garcia, M., Insabato, A., Pardo-Vazquez, J.L., Acuña, C. and Deco, G.	Neural correlates of confidence in decision-making	Poster at the ICON Congress, Palma de Mallorca, Spain, September 2011
Morrison et al. 2011	Morrison, A., Denker, M., Wiebelt, B., Fliegner, D. and Diesmann, M.	New possibilities for advanced analysis methods in neuroscience through modern approaches to trivial parallel data processing	Poster at the Ninth Göttingen Meeting of the German Neuroscience Society 2011: T27-11B	abstract
Peyrache et al. 2011b	Peyrache, A., Dehghani, N., Eskandar, E., Madsen, J., Anderson, W., Donoghue, J., Halgren, E., Cash, S.S. and Destexhe, A.	Spatio-temporal dynamics of neocortical excitation and inhibition during human sleep.	Soc Neurosci Abstracts 36: 451.06
Plesser et al. 2011	Plesser, H.E., Crook, S. and Davison, A.P.	Reproducible models and reliable simulations: Current trends in computational neuroscience	SIAM Computational Science and Engineering 2011, Reno, Nevada, February 2011
Potjans and Diesmann 2011b	Potjans, T.C. and Diesmann, M.	Robustness vs. flexibility: how do external inputs shape the activity in a data-based layered cortical network model?	BMC Neuroscience (2011) 12(Suppl 1):74 doi:10.1186/1471-2202-12-S1-P74	fulltext
Potjans et al. 2011	Potjans, T.C., Kunkel, S., Morrison, A., Plesser, H.E. and Diesmann, M.	Beyond local cortical network modeling: linking microscopic and macroscopic connectivity in brainscale simulations	Poster at the Ninth Göttingen Meeting of the German Neuroscience Society 2011: T26-6A	abstract
Raikov et al. 2011	Raikov, I., Cannon, R., Clewley, R., Cornelis, H., Davison, A., De Schutter, E., Djurfeldt, M., Gleeson, P., Gorchetchnikov, A., Plesser, H.E., Hill, S., Hines, M., Kriener, B., Le Franc, Y., Lo, C.-C., Morrison, A., Muller, E., Ray, S., Schwabe, L. and Szatmary, B.	NineML: the network interchange for neuroscience modeling language	BMC Neuroscience 2011, 12(Suppl 1):P330 doi:10.1186/1471-2202-12-S1-P330	abstract
schiefer11	Schiefer, S., Hartmann, S., Scholze, S., Partzsch, J., Mayr, C., Henker, S. and Schüffny, R.	Live Demonstration: Packet-Based AER with 3 GEvent/s Cumulative Throughput	IEEE International Symposium on Circuits and Systems ISCAS 2011, p. 1988
Schmucker et al. 2011	Schmuker, M., Brüderle, D., Schrader, S. and Nawrot, M.	Ten thousand times faster: Classifying multidimensional data on a spiking neuromorphic hardware system.	Poster presented at BC11 - Bernstein Conference 2011 Computational Neuroscience / Neurotechnology and Neurex Annual Meeting, 04 October 2011 doi:10.1038/npre.2011.6547.1
Schultze-Kraft et al. 2011	Schultze-Kraft, M., Diesmann, M., Grün, S. and Helias, M.	Correlation transmission of spiking neurons is boosted by synchronous input	BMC Neuroscience 2011, 12(Suppl 1):P144 doi:10.1186/1471-2202-12-S1-P144	fulltext
thanasoulis11	Thanasoulis, V. and Hartmann, S. and Ehrlich, M. and Partzsch, J. and Mayr, C. and Schüffny, R.	Long-Term Pulse Stimulation and Recording in an Accelerated Neuromorphic System	Dresdner Arbeitstagung Schaltungs und Systementwurf (DASS 2011), p. 72-77
Wagatsuma et al. 2011b	Wagatsuma, N., Potjans, T.C., Diesmann, M. and Fukai, T.	Layer dependent neural modulation of a realistic layered-microcircuit model in visual cortex based on bottom-up and top-down signals	BMC Neuroscience 2011, 12(Suppl 1):P114 doi:10.1186/1471-2202-12-S1-P114	fulltext
Wirtssohn et al. 2011	Wirtssohn, S., Brochier, T., Denker, M., Grün, S. and Riehle, A.	Mapping the spatial structure of LFP activity in motor cortex	Poster at the Ninth Göttingen Meeting of the German Neuroscience Society 2011: T21-8B	abstract

PhD Thesis

Arduin 2011	Arduin, P.-J.	Operant conditionning of neurons in the rat motor cortex for a graded control of a prosthetic device	Ph. D. thesis (2011)
Estebanez 2011	Estebanez, L.	Cracterization of sensory processings in the barrel cortex of the anesthetized rat	Ph. D. thesis (2011)
Galtier 2011	Mathieu Galtier	A mathematical approach to unsupervised learning in recurrent neural networks	PhD thesis	fulltext, BibTeX
Naud 2011	Naud Richard	The Dynamics of Adapting Neurons	EPFL PhD Thesis	fulltext
Veltz 2011b	Romain Veltz	Nonlinear analysis methods in neural field models	PhD, Univ Paris Est ED MSTIC	abstract, BibTeX

Master/Diploma Thesis

Bytschok 2011	Bytschok, I.	From Shared Input to correlated Neuron Dynamics: Development of a Predictive Framework	Diploma thesis (2011)	abstract, fulltext
Kononov 2011	Kononov, A.	Testing of an Analog Neuromorphic Network Chip	Diploma thesis (2011)	abstract, fulltext
Kuruvilla 2011	Kuruvilla, R.	Entwicklung und Aufbau einer anwenderfreundlichen Hardwareumgebung für ein neuromorphes Chipsystem (in German)	Diploma thesis (2011)	abstract, fulltext
Zerlaut 2011	Zerlaut, Y.	Transfer Functions of Neurons and Macroscopic Modelling of Network States	Master Thesis (2011)

Bachelor Thesis

Probst 2011

Probst, D.

Analysis of the Liquid Computing Paradigm on a Neuromorphic Hardware System

Diploma thesis (2011)

abstract, fulltext

Web publication

Benjaminsson et al. 2011	Benjaminsson, S., Silverstein, D., Herman, P., Melis, P., Slavnic, V., Spasojevic, M., Alexiev, K. and Lansner, A.	Visualization of output from Large-Scale Brain Simulations	Partnership for Advanced Computing in Europe (PRACE), Project ID: PRPC06	fulltext
Potjans and Diesmann 2011	Potjans, T.C. and Diesmann, M.	The cell-type specific connectivity of the local cortical network explains prominent features of neuronal activity	arXiv:1106.5678v1 [q-bio.NC] 28 Jun 2011	abstract

Newspaper article

	Marshall, M.	Brain-like chip outstrips normal computers	New Scientist magazine - 24 November 2012 (2012) 2892	fulltext
	Walpot, M.	Computerwissenschaft: Wenn das Gehirn wuerfelt	DiePresse.COM / Die Presse am Sonntag, 19 Nov 2011 (online) and 20 Nov 2011 (print)	fulltext

Press release

Computer suchen ihre Nachfolger (German language joint press release JUELICH and UHEI)

Juelich website, September 2011

fulltext