Publications of Davison, A

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28 publication entries, 10 of them (printed in bold in the list) acknowledge the project support.
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Review
Book chapter
Conference contribution: talk
Conference contribution: poster
Other

Paper (reviewed)

Antolik and Davison 2013Antolik, J. and Davison, A.P.Integrated workflows for spiking neuronal network simulationsFront. Neuroinform. (2013) 7:34
doi:10.3389/fninf.2013.00034
fulltext
Brüderle et al. 2011Brüderle, D., Petrovici, M. A., Vogginger, B., Ehrlich, M., Pfeil, T., Millner, S., Grübl, A., Wendt, K., Müller, E., Schwartz, M.-O., de Oliveira, D. H., Jeltsch, S., Fieres, J., Schilling, M., Müller, P., Breitwieser, O., Petkov, V., Muller, L., Davison, A. P., Krishnamurthy, P., Kremkow, J., Lundqvist, M., Muller, E., Partzsch, J., Scholze, S., Zühl, L., Mayr, C., Destexhe, A., Diesmann, M., Potjans, T. C., Lansner, A., Schüffny, R., Schemmel, J. and Meier, K. A comprehensive workflow for general-purpose neural modeling with highly configurable neuromorphic hardware systemsBiological Cybernetics (2011) 104(4-5): 263-296
doi:10.1007/s00422-011-0435-9
abstract, fulltext
Davison 2012Davison, A. P.Automated Capture of Experiment Context for Easier Reproducibility in Computational Research Computing in Science and Engineering (2012) 14: 48-56
doi:10.1109/MCSE.2012.41
abstract, fulltext
Djurfeldt et al. 2014Djurfeldt, M., Davison, A.P. and Eppler, J.M. Efficient generation of connectivity in neuronal networks from simulator-independent descriptionsFront. Neuroinform. (2014) 8:43
doi:10.3389/fninf.2014.00043
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Garcia et al. 2014Garcia, S., Guarino, D., Jaillet, F., Jennings, T.R., Pröpper, R., Rautenberg, P.L., Rodgers, C., Sobolev, A., Wachtler, T., Yger, P. and Davison, A.P.Neo: an object model for handling electrophysiology data in multiple formatsFront. Neuroinform. (2014) 8:10
doi:10.3389/fninf.2014.00010
abstract, fulltext
Vella et al. 2014Vella, M., Cannon, R.C., Crook, S., Davison, A.P., Ganapathy, G., Robinson, H.P.C., Silver, R.A. and Gleeson, P.libNeuroML and PyLEMS: using Python to combine procedural and declarative modelling approaches in computational neuroscienceFrontiers in Neuroinformatics (2014) 8: 38
doi:10.3389/fninf.2014.00038
abstract

Review

Crook et al. 2012Crook, S. M., Bednar, J. A., Berger, S., Cannon, R., Davison, A. P., Djurfeldt, M., Eppler, J., Kriener, B., Furber, S., Graham, B., Plesser, H. E., Schwabe, L., Smith, L., Steuber, V. and van Albada, S.Creating, documenting and sharing network modelsNetwork: Computation in Neural Systems (2012) 23(4): 131-149
doi:10.3109/0954898X.2012.722743
abstract, fulltext

Book chapter

Crook et al. 2013Crook., S. M., Davison, A. P. and Plesser, H. E. Learning from the past: approaches for reproducibility in computational neuroscienceIn: J.M. Bower (Ed.), 20 Years of Computational Neuroscience, Springer, ISBN 978-1-4614-1423-0
doi:10.1007/978-1-4614-1424-7_4
abstract
Davison et al. 2014Davison, A.P., Mattioni, M., Samarkanov, D. and Telenczuk, B.Sumatra: A Toolkit for Reproducible ResearchIn: Implementing Reproducible Research (2014), edited by V. Stodden, F. Leisch and R.D. Peng, Chapman & Hall/CRC: Boca Raton, Florida., pp. 57-79 abstract

Conference contribution: talk

Davison 2011Davison, A.Using PyNN and NineMLTalk at CNS*2011 Workshop: Emerging standards for network modeling
Davison 2013Davison, A.Provenance tracking for complex data analysis workflows in neuroscience10th Göttingen Meeting of the German Neuroscience Society, Göttingen, Germany, March (2013).
Davison 2013bDavison, A.PyNN: a simulator-independent platform for large scale, data-driven neuronal simulationsCosyne workshops, Snowbird, Utah, USA, March (2013)
Denker et al. 2014Denker, M., Abrams, M., Wachtler, T., Davison, A. and Grün, S. INCF workshop report: New perspectives on workflows and data management for the analysis of electrophysiological data.Neuroinformatics 2014, Leiden, Netherlands, 08/25/2014 - 08/27/2014
doi:10.3389/conf.fninf.2014.18.00021
abstract
Denker et al. 2014bDenker, M., Zehl, L., Yegenoglu, A., Wachtler, T., Davison, A. and Grün, S. Improving Workflows and Data Management for the Analysis of Electrophysiological DataAdvances in Neuroinformatics 2014, AINI2014, Wako-shi, Japan, 09/25/2014 - 09/26/2014

Conference contribution: poster

Antolik and Davison 2013bAntolik, J. and Davison, A.P.Mozaik: a framework for model construction, simulation, data analysis and visualization for large-scale spiking neural circuit modelsNeuroinformatics 2013, Stockholm, Sweden, August (2013)
doi:10.3389/conf.fninf.2013.09.00018
abstract
Davison 2011bDavison, A.Collaborative and reproducible simulation and data analysis with SumatraFront. Neuroinform. Conference Abstract: 4th INCF Congress of Neuroinformatics
doi:10.3389/conf.fninf.2011.08.00079
abstract
Davison 2011cDavison, A.Automated tracking of scientific computationsAMP 2011: Reproducible Research-Tools and Strategies for Scientific Computing, Vancouver, Canada, July 2011
Davison et al. 2013Davison, A.P., Djurfeldt, M., Eppler, J.M., Gleeson, P., Hull, M. and Muller, E.B.An integration layer for neural simulation: PyNN in the software forestNeuroinformatics 2013, Stockholm, Sweden, August (2013).
doi:10.3389/conf.fninf.2013.09.00020
abstract
Davison et al. 2013bDavison, A.P., Brizzi, T., Guarino, D., Manette, O.F., Monier, C., Sadoc, G. and Frégnac, Y.Helmholtz: a customizable framework for neurophysiology data management Neuroinformatics 2013, Stockholm, Sweden, 27 Aug - 29 Aug, (2013)
doi:10.3389/conf.fninf.2013.09.00025
abstract
Denker et al. 2011aDenker, M., Davison, A., Grün, S. and Diesmann, M. How collaborative projects that involve complicated electrophysiological data sets profit from workflow designPoster at the 4th INCF Congress of Neuroinformatics, Boston, USA
doi:10.3389/conf.fninf.2011.08.00080
fulltext
Denker et al. 2011bDenker, M., Davison, A., Grün, S. and Diesmann, M. Towards guiding principles in workflow design to facilitate collaborative projects involving massively parallel electrophysiological dataBMC Neuroscience 2011, 12(Suppl 1):P131
doi:10.1186/1471-2202-12-S1-P131
fulltext
Denker et al. 2015Denker, M., Yegenoglu, A., Holstein, D., Torre, E., Jennings, T., Davison, A. and Grün, S.elephant: An open-source tool for the analysis of electrophysiological dataProceedings of the 11th Meeting of the German Neuroscience Society, Neuroforum (2015) T27-2B
Eppler et al. 2012Eppler, J. M., Djurfeldt, M., Muller, E., Diesmann, M. and Davison, A.Combining simulator independent network descriptions with run-time interoperability based on PyNN and MUSICIn Conference Abstract: 5th INCF Congress of Neuroinformatics, Front. Neuroinform. (2012)
Gorchetchnikov et al. 2011Gorchetchnikov, A., Cannon, R., Clewley, R., Cornelis, H., Davison, A., De Schutter, E., Djurfeldt, M., Gleeson, P., Hill, S., Hines, M., Kriener, B., Le Franc, Y., Lo, C.-C., Morrison, A., Muller, E., Plesser, H.E., Raikov, I., Ray, S., Schwabe, L. and Szatmary, B.NineML: declarative, mathematically-explicit descriptions of spiking neuronal networksFront. Neuroinform. Conference Abstract: 4th INCF Congress of Neuroinformatics
doi:10.3389/conf.fninf.2011.08.00098
abstract
Plesser et al. 2011Plesser, H.E., Crook, S. and Davison, A.P.Reproducible models and reliable simulations: Current trends in computational neuroscienceSIAM Computational Science and Engineering 2011, Reno, Nevada, February 2011
Raikov et al. 2011Raikov, I., Cannon, R., Clewley, R., Cornelis, H., Davison, A., De Schutter, E., Djurfeldt, M., Gleeson, P., Gorchetchnikov, A., Plesser, H.E., Hill, S., Hines, M., Kriener, B., Le Franc, Y., Lo, C.-C., Morrison, A., Muller, E., Ray, S., Schwabe, L. and Szatmary, B. NineML: the network interchange for neuroscience modeling languageBMC Neuroscience 2011, 12(Suppl 1):P330
doi:10.1186/1471-2202-12-S1-P330
abstract
Teeters et al. 2013Teeters, J.L., Benda, J., Davison, A.P., Eglen, S., Gerhard, S., Gerkin, R.C., Grewe, J., Harris, K., Jackson, T., Moucek, R., Pröpper, R., Sessions, H.L., Smith, L.S., Sobolev, A., Sommer, F.T., Stoewer, A. and Wachtler, T. Considerations for developing a standard for storing electrophysiology data in HDF5Neuroinformatics 2013, Stockholm, Sweden, 27 Aug - 29 Aug, (2013)
doi:10.3389/conf.fninf.2013.09.00069
abstract

Other

Denker et al. 2014cDenker, M., Yegenoglu, A., Davison, A. and Grün, S. Towards a Unifying Tool for the Analysis of Electrophysiological Data Sets based on NeoINM Retreat 2014, Jülich, Germany, 07/01/2014 - 07/02/2014


 
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26 August 2016